Package: SRscore
Type: Package
Title: Simple Transcriptome Meta-Analysis for Identifying
        Stress-Responsive Genes
Version: 0.1.2
Author: Yusuke Fukuda [aut, cre], Atsushi Fukushima [aut]
Authors@R: c(person(given = "Yusuke",
                    family = "Fukuda",
                    role = c("aut", "cre"),
                    email = "ysk420140@gmail.com"),
              person(given = "Atsushi",
                    family = "Fukushima",
                    role = "aut"))
Maintainer: Yusuke Fukuda <ysk420140@gmail.com>
Description: Stress Response score (SRscore) is a stress responsiveness
        measure for transcriptome datasets and is based on the
        vote-counting method. The SRscore is determined to evaluate and
        score genes on the basis of the consistency of the direction of
        their regulation (Up-regulation, Down-regulation, or No change)
        under stress conditions across multiple analyzed research
        projects. This package is based on the HN-score (score based on
        the ratio of gene expression between hypoxic and normoxic
        conditions) proposed by Tamura and Bono (2022)
        <doi:10.3390/life12071079>, and can calculate both the original
        method and an extended calculation method described in Fukuda
        et al. (2025) <doi:10.1093/plphys/kiaf105>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
Imports: dplyr, tidyr, utils, rlang
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), ggplot2, tibble,
        ComplexHeatmap, clusterProfiler, org.At.tair.db, BiocStyle,
        RColorBrewer, genefilter, DT
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Config/pak/sysreqs: libicu-dev
Repository: https://fusk-kpu.r-universe.dev
Date/Publication: 2026-03-24 11:20:50 UTC
RemoteUrl: https://github.com/fusk-kpu/srscore
RemoteRef: HEAD
RemoteSha: c47cbea2c16b503c7887c5fe118ba6ca2977f04f
NeedsCompilation: no
Packaged: 2026-10-31 08:54:41 UTC; root